TF Info Page for ZSCAN31 (C2H2 ZF)

Conclusion

Assessment Binding Mode Motif Status Notes Comments
Known motif 1 Monomer or homomultimer High-throughput in vitro ChIP-seq motif is consistent with recognition code (RCADE) Also known as ZNF323

Description

Description: zinc finger and SCAN domain containing 31 [Source:HGNC Symbol;Acc:HGNC:14097]
Entrez Summary This gene encodes a protein containing multiple C2H2-type zinc finger motifs. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2016]
Ensembl ID: ENSG00000235109
External Link: CisBP
Interpro IPR003309; IPR007087; IPR008916; IPR015880;
Protein Domain: ENSP00000345339
Protein Domain: ENSP00000380050
Protein Domain: ENSP00000413705
Protein Domain: ENSP00000402937
Protein Domain: ENSP00000390076
Protein Domain: ENSP00000391235
Protein Domain: ENSP00000416225
Protein Domain: ENSP00000412519
Protein Domain: ENSP00000411033
Protein Domain: ENSP00000416108
Protein Domain: ENSP00000389479
Domain:
Protein: ENSP00000345339DBD: C2H2 ZF Containing ProteinsOther: SCAN
Protein: ENSP00000380050DBD: C2H2 ZF Containing ProteinsOther: SCAN
Protein: ENSP00000413705DBD: C2H2 ZF Containing ProteinsOther: SCAN
Protein: ENSP00000402937DBD: C2H2 ZF Containing ProteinsOther:
Protein: ENSP00000390076DBD: C2H2 ZF Containing ProteinsOther: SCAN
Protein: ENSP00000391235DBD: C2H2 ZF Containing ProteinsOther:
Protein: ENSP00000416225DBD: C2H2 ZF Containing ProteinsOther: SCAN
Protein: ENSP00000412519DBD: C2H2 ZF Containing ProteinsOther: SCAN
Protein: ENSP00000411033DBD: C2H2 ZF Containing ProteinsOther: SCAN
Protein: ENSP00000416108DBD: C2H2 ZF Containing ProteinsOther: SCAN
Protein: ENSP00000389479DBD: C2H2 ZF Containing ProteinsOther: SCAN

Previous Annotations

Source Annotation
TF-CAT classification No
PMIDS:
Vaquerizas 2009 TF classification
"a" Has direct evidence of TF function;
"b" Has evidence for an orthologous TF;
"c" contains likely DBDs, but has no functional evidence;
"x" is an unlikely TF such as predicted gene, genes with likely non-specific DBDs or that have function outside transcription;
"other" category contains proteins without clear DBDs they curated from external sources.
b
CisBP considers it as a TF? Yes
TFclass considers it as a TF? Yes
Has GO:0003700 "transcription factor activity, sequence-specific DNA binding" No
GO-Info GO:0003700
sequence-specific DNA binding transcription factor activity
IBA - GO_REF:0000033
Initial Assessment
1a1 Protein has a high confidence PWM (HT-SELEX, PBM or B1H model) or there is a crystal structure that supports sequence specific DNA binding;
1a2 There is high confidence data for a close ortholog (as defined in CisBP);
2a1 There is lower confidence direct evidence, such as a Jaspar, Hocomoco or Transfac model;
2a2 There is lower confidence evidence for an close ortholog;
3a There is decent circumstantial evidence for its role as a TF or not;
4a Two or more datasets predict it as a TF;
5a One of the source datasets predicts is as a TF
1a1, Direct HQ evidence
TF has conditional DNA-binding requirements

DNA-Binding

Published Motif Data

Source Annotation Motif Evidence
RCADESchmitges2016Direct
HT-SELEXYin2017Direct
Methyl-HT-SELEXYin2017Direct
ChIP-seqNajafabadi2015Direct

Structure

Structure PDB Not_Covered

Experimental History

Method Constructs
Tried in PBM?
(Whether the protein was tried in PBM or not)
Tried in HT-SELEX
(Whether the protein was tried in HT-SELEX or not, and if so, then what kind of clones were tested)
Other Information?
(Tried with another method and failed?)

External Contribution