TF Info Page for CEBPD (bZIP)

Conclusion

Assessment Binding Mode Motif Status Notes Comments
Known motif 1 Monomer or homomultimer High-throughput in vitro CEBPD binds as both a homodimer and as a heterdimer with other C/EBP TFs (PMID: 1884998; PMID: 12805554).

Description

Description: CCAAT/enhancer binding protein delta [Source:HGNC Symbol;Acc:HGNC:1835]
Entrez Summary NA
Ensembl ID: ENSG00000221869
External Link: CisBP
Interpro IPR004827; IPR016468;
Protein Domain: ENSP00000386165
Domain:
Protein: ENSP00000386165DBD: bZIPOther:

Previous Annotations

Source Annotation
TF-CAT classification TF Gene_DNA-Binding
sequence-specific_DNA Binding
Transactivation_
PMIDS:8572170 16192306
Vaquerizas 2009 TF classification
"a" Has direct evidence of TF function;
"b" Has evidence for an orthologous TF;
"c" contains likely DBDs, but has no functional evidence;
"x" is an unlikely TF such as predicted gene, genes with likely non-specific DBDs or that have function outside transcription;
"other" category contains proteins without clear DBDs they curated from external sources.
b
CisBP considers it as a TF? Yes
TFclass considers it as a TF? Yes
Has GO:0003700 "transcription factor activity, sequence-specific DNA binding" No
GO-Info GO:0001077
RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor a
IEA - GO_REF:0000019
Initial Assessment
1a1 Protein has a high confidence PWM (HT-SELEX, PBM or B1H model) or there is a crystal structure that supports sequence specific DNA binding;
1a2 There is high confidence data for a close ortholog (as defined in CisBP);
2a1 There is lower confidence direct evidence, such as a Jaspar, Hocomoco or Transfac model;
2a2 There is lower confidence evidence for an close ortholog;
3a There is decent circumstantial evidence for its role as a TF or not;
4a Two or more datasets predict it as a TF;
5a One of the source datasets predicts is as a TF
1a1, Direct HQ evidence
TF has conditional DNA-binding requirements

DNA-Binding

Published Motif Data

Source Annotation Motif Evidence
HT-SELEXJolma2013Direct
HT-SELEXYin2017Direct
Methyl-HT-SELEXYin2017Direct
TransfacTransfacLicense requiredDirect
TransfacTransfacLicense requiredDirect
TransfacTransfacLicense requiredDirect
MiscHocoMocoDirect
PBMMann2013Inferred - BAE29047.1 (100% AA Identity, Mus musculus)
PBMMann2013Inferred - BAE29047.1 (100% AA Identity, Mus musculus)
PBMZoo_01Inferred - BAE29047.1 (100% AA Identity, Mus musculus)
TransfacTransfacLicense requiredInferred - Cebpd (98% AA Identity, Rattus norvegicus)
PBMMann2013Inferred - Cebpa (66% AA Identity, Mus musculus)
PBMMann2013Inferred - Cebpa (66% AA Identity, Mus musculus)
PBMZoo_01Inferred - Cebpa (66% AA Identity, Mus musculus)
ChIP-seqJASPARInferred - CEBPA (66% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - CEBPA (66% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - CEBPA (66% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - CEBPA (66% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - CEBPA (66% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - CEBPA (66% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - CEBPA (66% AA Identity, Homo sapiens)
MiscHocoMocoInferred - CEBPA (66% AA Identity, Homo sapiens)
PBMDREAM_contestInferred - Cebpb (65% AA Identity, Mus musculus)
PBMMann2013Inferred - Cebpb (65% AA Identity, Mus musculus)
PBMMann2013Inferred - Cebpb (65% AA Identity, Mus musculus)
PBMZoo_01Inferred - Cebpb (65% AA Identity, Mus musculus)
HT-SELEXJolma2010Inferred - CEBPE (65% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - CEBPE (65% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - CEBPE (65% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - CEBPE (65% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - CEBPE (65% AA Identity, Homo sapiens)
MiscHOMERInferred - Cebpb (65% AA Identity, Mus musculus)
MiscHocoMocoInferred - CEBPE (65% AA Identity, Homo sapiens)
SMiLE-seqIsakova2017Inferred - CEBPB (64% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - CEBPB (64% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - CEBPB (64% AA Identity, Homo sapiens)
ChIP-seqENCODEInferred - CEBPB (64% AA Identity, Homo sapiens)
ChIP-seqENCODEInferred - CEBPB (64% AA Identity, Homo sapiens)
ChIP-seqENCODEInferred - CEBPB (64% AA Identity, Homo sapiens)
SELEXJASPARInferred - CEBPB (64% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - CEBPB (64% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - CEBPB (64% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - CEBPB (64% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - CEBPB (64% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - CEBPB (64% AA Identity, Homo sapiens)
MiscHocoMocoInferred - CEBPB (64% AA Identity, Homo sapiens)
PBMZoo_01Inferred - Cebpe (63% AA Identity, Mus musculus)

Structure

Structure PDB Not_Covered

Experimental History

Method Constructs
Tried in PBM?
(Whether the protein was tried in PBM or not)
Tried in HT-SELEX
(Whether the protein was tried in HT-SELEX or not, and if so, then what kind of clones were tested)
Other Information?
(Tried with another method and failed?)

External Contribution