TF Info Page for SATB1 (CUT; Homeodomain)
Conclusion
| Assessment | Binding Mode | Motif Status | Notes | Comments |
|---|---|---|---|---|
| Known motif | 3 Low specificity DNA-binding protein | In vivo/Misc source | Only known motifs are from Transfac or HocoMoco - origin is uncertain | SATBs were analyzed by Gwenael Badis and Mike Berger a decade ago; by PBMs. It did not yield a motif; instead; the signal was very closely proportional to nucleotide content, as the name suggests (Special AT Binding). |
Description
| Description: | SATB homeobox 1 [Source:HGNC Symbol;Acc:HGNC:10541] | |
| Entrez Summary | TBA | |
| Ensembl ID: | ENSG00000182568 | |
| External Link: | ||
| Interpro | IPR001356; IPR003350; IPR009057; IPR010982; | |
| Protein Domain: | ||
| Protein: ENSP00000341024 | DBD: CUT, Homeodomain | Other: CUTL, ULD |
| Protein: ENSP00000399518 | DBD: CUT, Homeodomain | Other: CUTL, SUIM_assoc, ULD |
| Protein: ENSP00000399708 | DBD: CUT, Homeodomain | Other: CUTL, ULD |
| Protein: ENSP00000479866 | DBD: CUT, Homeodomain | Other: CUTL, RuvA_C, ULD |
| Protein: ENSP00000408871 | DBD: CUT, Homeodomain | Other: ULD |
| Protein: ENSP00000390529 | DBD: CUT, Homeodomain | Other: ULD |
| Protein: ENSP00000453908 | DBD: CUT, Homeodomain | Other: |
Previous Annotations
| Source | Annotation |
| TF-CAT classification |
TF Gene_DNA-Binding sequence-specific_DNA Binding_ PMIDS:1505028 8114718 9340009 |
| Vaquerizas 2009 TF classification "a" Has direct evidence of TF function; "b" Has evidence for an orthologous TF; "c" contains likely DBDs, but has no functional evidence; "x" is an unlikely TF such as predicted gene, genes with likely non-specific DBDs or that have function outside transcription; "other" category contains proteins without clear DBDs they curated from external sources. |
a |
| CisBP considers it as a TF? | Yes |
| TFclass considers it as a TF? | Yes |
| Has GO:0003700 "transcription factor activity, sequence-specific DNA binding" | Yes |
| GO-Info |
GO:0001227 RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor IDA - PMID:15851481 |
|
Initial Assessment
1a1 Protein has a high confidence PWM (HT-SELEX, PBM or B1H model) or there is a crystal structure that supports sequence specific DNA binding; 1a2 There is high confidence data for a close ortholog (as defined in CisBP); 2a1 There is lower confidence direct evidence, such as a Jaspar, Hocomoco or Transfac model; 2a2 There is lower confidence evidence for an close ortholog; 3a There is decent circumstantial evidence for its role as a TF or not; 4a Two or more datasets predict it as a TF; 5a One of the source datasets predicts is as a TF |
1a1, Direct HQ evidence |
| TF has conditional DNA-binding requirements |