get eID ENSG00000180818 else done selects

TF Info Page for HOXC10 (Homeodomain)

Conclusion

Assessment Binding Mode Motif Status Notes Comments
Known motif 1 Monomer or homomultimer High-throughput in vitro

Description

Description: homeobox C10 [Source:HGNC Symbol;Acc:HGNC:5122]
Entrez Summary TBA
Ensembl ID: ENSG00000180818
External Link:
Interpro IPR001356; IPR009057; IPR017970; IPR020479;
Protein Domain:
Protein: ENSP00000307321DBD: HomeodomainOther:
Protein: ENSP00000421946DBD: HomeodomainOther:

Previous Annotations

Source Annotation
TF-CAT classification TF Gene Candidate_DNA-Binding
sequence-specific_DNA Binding_
PMIDS:10835276 10835276 12917416
Vaquerizas 2009 TF classification
"a" Has direct evidence of TF function;
"b" Has evidence for an orthologous TF;
"c" contains likely DBDs, but has no functional evidence;
"x" is an unlikely TF such as predicted gene, genes with likely non-specific DBDs or that have function outside transcription;
"other" category contains proteins without clear DBDs they curated from external sources. 		a
CisBP considers it as a TF? Yes
TFclass considers it as a TF? Yes
Has GO:0003700 "transcription factor activity, sequence-specific DNA binding" No
GO-Info
Initial Assessment
1a1 Protein has a high confidence PWM (HT-SELEX, PBM or B1H model) or there is a crystal structure that supports sequence specific DNA binding;
1a2 There is high confidence data for a close ortholog (as defined in CisBP);
2a1 There is lower confidence direct evidence, such as a Jaspar, Hocomoco or Transfac model;
2a2 There is lower confidence evidence for an close ortholog;
3a There is decent circumstantial evidence for its role as a TF or not;
4a Two or more datasets predict it as a TF;
5a One of the source datasets predicts is as a TF 		1a1, Direct HQ evidence
TF has conditional DNA-binding requirements

DNA-Binding

Published Motif Data

Source Annotation Motif Evidence
HT-SELEXJolma2013Direct
HT-SELEXJolma2013Direct
HT-SELEXJolma2013Direct
HT-SELEXYin2017Direct
HT-SELEXYin2017Direct
HT-SELEXYin2017Direct
HT-SELEXYin2017Direct
Methyl-HT-SELEXYin2017Direct
Methyl-HT-SELEXYin2017Direct
Methyl-HT-SELEXYin2017Direct
Methyl-HT-SELEXYin2017Direct
PBMBerger08Inferred - Hoxc10 (100% AA Identity, Mus musculus)
HT-SELEXYin2017Inferred - HOXD10 (96% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - HOXD10 (96% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - HOXD10 (96% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - HOXD10 (96% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXD10 (96% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXD10 (96% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXD10 (96% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXD10 (96% AA Identity, Homo sapiens)
PBMBerger08Inferred - Hoxd10 (96% AA Identity, Mus musculus)
TransfacTransfacLicense requiredInferred - HOXD10 (96% AA Identity, Homo sapiens)
MiscHocoMocoInferred - HOXD10 (96% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - HOXA10 (92% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - HOXA10 (92% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - HOXA10 (92% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - HOXA10 (92% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXA10 (92% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXA10 (92% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXA10 (92% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXA10 (92% AA Identity, Homo sapiens)
PBMBerger08Inferred - Hoxa10 (92% AA Identity, Mus musculus)
TransfacTransfacLicense requiredInferred - Hoxa10 (92% AA Identity, Mus musculus)
HT-SELEXYin2017Inferred - HOXA9 (84% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - HOXA9 (84% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXA9 (84% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXA9 (84% AA Identity, Homo sapiens)
PBMBerger08Inferred - Hoxa9 (84% AA Identity, Mus musculus)
TransfacTransfacLicense requiredInferred - HOXA9 (84% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - HOXA9 (84% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - HOXA9 (84% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - HOXA9 (84% AA Identity, Homo sapiens)
ChIP-seqJASPARInferred - Hoxa9 (84% AA Identity, Mus musculus)
MiscHocoMocoInferred - HOXA9 (84% AA Identity, Homo sapiens)
MiscHocoMocoInferred - HOXA9 (84% AA Identity, Homo sapiens)
MiscHOMERInferred - Hoxa9 (84% AA Identity, Mus musculus)
HT-SELEXYin2017Inferred - HOXC9 (82% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - HOXC9 (82% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXC9 (82% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXC9 (82% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - HOXD9 (82% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - HOXD9 (82% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - HOXD9 (82% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - HOXD9 (82% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXD9 (82% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXD9 (82% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXD9 (82% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXD9 (82% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - HOXD9 (82% AA Identity, Homo sapiens)
MiscHocoMocoInferred - HOXD9 (82% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - HOXB9 (80% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - HOXB9 (80% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXB9 (80% AA Identity, Homo sapiens)
PBMBerger08Inferred - Hoxb9 (80% AA Identity, Mus musculus)
PBMBerger08Inferred - Hoxc9 (80% AA Identity, Mus musculus)
ChIP-seqJASPARInferred - Hoxc9 (80% AA Identity, Mus musculus)
MiscHOMERInferred - Hoxc9 (80% AA Identity, Mus musculus)
HT-SELEXYin2017Inferred - HOXD11 (71% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXD11 (71% AA Identity, Homo sapiens)
PBMBerger08Inferred - Hoxd11 (71% AA Identity, Mus musculus)
PBMBerger08Inferred - Hoxd8 (71% AA Identity, Mus musculus)
B1HJASPARInferred - abd-A (70% AA Identity, Drosophila melanogaster)
HT-SELEXNitta2015Inferred - abd-A (70% AA Identity, Drosophila melanogaster)
HT-SELEXNitta2015Inferred - abd-A (70% AA Identity, Drosophila melanogaster)
HT-SELEXYin2017Inferred - HOXA11 (70% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - HOXA11 (70% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXA11 (70% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXA11 (70% AA Identity, Homo sapiens)
PBMBerger08Inferred - Hoxa11 (70% AA Identity, Mus musculus)
HT-SELEXYin2017Inferred - HOXB8 (70% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXB8 (70% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXB8 (70% AA Identity, Homo sapiens)
PBMBerger08Inferred - Hoxb8 (70% AA Identity, Mus musculus)
HT-SELEXYin2017Inferred - HOXC11 (70% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - HOXC11 (70% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - HOXC11 (70% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - HOXC11 (70% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXC11 (70% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXC11 (70% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXC11 (70% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXC11 (70% AA Identity, Homo sapiens)
PBMBerger08Inferred - Hoxc11 (70% AA Identity, Mus musculus)
HT-SELEXYin2017Inferred - HOXC8 (70% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXC8 (70% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXC8 (70% AA Identity, Homo sapiens)
PBMBerger08Inferred - Hoxc8 (70% AA Identity, Mus musculus)
HT-SELEXYin2017Inferred - HOXD8 (70% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXD8 (70% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXD8 (70% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - abd-A (70% AA Identity, Drosophila melanogaster)
TransfacTransfacLicense requiredInferred - HOXC8 (70% AA Identity, Homo sapiens)
MisciDMMPMMInferred - abd-A (70% AA Identity, Drosophila melanogaster)
MiscHocoMocoInferred - HOXB8 (70% AA Identity, Homo sapiens)
MiscHocoMocoInferred - HOXC8 (70% AA Identity, Homo sapiens)
PBMBusserDevelopment2012Inferred - Abd-B (68% AA Identity, Drosophila melanogaster)
B1HJASPARInferred - Abd-B (68% AA Identity, Drosophila melanogaster)
HT-SELEXNitta2015Inferred - Abd-B (68% AA Identity, Drosophila melanogaster)
HT-SELEXNitta2015Inferred - Abd-B (68% AA Identity, Drosophila melanogaster)
HT-SELEXNitta2015Inferred - Abd-B (68% AA Identity, Drosophila melanogaster)
HT-SELEXNitta2015Inferred - Abd-B (68% AA Identity, Drosophila melanogaster)
HT-SELEXYin2017Inferred - HOXA6 (68% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXA6 (68% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXA6 (68% AA Identity, Homo sapiens)
PBMBerger08Inferred - Hoxa6 (68% AA Identity, Mus musculus)
TransfacTransfacLicense requiredInferred - Abd-B (68% AA Identity, Drosophila melanogaster)
TransfacTransfacLicense requiredInferred - Abd-B (68% AA Identity, Drosophila melanogaster)
MisciDMMPMMInferred - Abd-B (68% AA Identity, Drosophila melanogaster)
B1HJASPARInferred - Antp (66% AA Identity, Drosophila melanogaster)
PBMTF_EvolutionUnpublished DataInferred - Cbr-mab-5 (66% AA Identity, Caenorhabditis briggsae)
HT-SELEXYin2017Inferred - HOXA4 (66% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXA4 (66% AA Identity, Homo sapiens)
PBMBerger08Inferred - Hoxa4 (66% AA Identity, Mus musculus)
HT-SELEXYin2017Inferred - HOXA7 (66% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXA7 (66% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXA7 (66% AA Identity, Homo sapiens)
PBMBerger08Inferred - Hoxa7 (66% AA Identity, Mus musculus)
PBMBerger08Inferred - Hoxa7 (66% AA Identity, Mus musculus)
HT-SELEXYin2017Inferred - HOXB6 (66% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXB6 (66% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXB6 (66% AA Identity, Homo sapiens)
PBMBerger08Inferred - Hoxb6 (66% AA Identity, Mus musculus)
PBMBarrera2016Inferred - HOXB7 (66% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - HOXB7 (66% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - HOXB7 (66% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXB7 (66% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXB7 (66% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXB7 (66% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - HOXB7 (66% AA Identity, Homo sapiens)
PBMBerger08Inferred - Hoxb7 (66% AA Identity, Mus musculus)
PBMBerger08Inferred - Hoxc6 (66% AA Identity, Mus musculus)
PBMZoo_01Inferred - Q0N4M8_NEMVE (66% AA Identity, Nematostella vectensis)
B1HJASPARInferred - Scr (66% AA Identity, Drosophila melanogaster)
HT-SELEXNitta2015Inferred - Scr (66% AA Identity, Drosophila melanogaster)
PBMBusserDevelopment2012Inferred - Ubx (66% AA Identity, Drosophila melanogaster)
B1HJASPARInferred - Ubx (66% AA Identity, Drosophila melanogaster)
HT-SELEXNitta2015Inferred - Ubx (66% AA Identity, Drosophila melanogaster)
TransfacTransfacLicense requiredInferred - Antp (66% AA Identity, Drosophila melanogaster)
TransfacTransfacLicense requiredInferred - HOXA4 (66% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - HOXA7 (66% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - Ubx (66% AA Identity, Drosophila melanogaster)
MisciDMMPMMInferred - Antp (66% AA Identity, Drosophila melanogaster)
MiscHocoMocoInferred - HOXA7 (66% AA Identity, Homo sapiens)
MiscHocoMocoInferred - HOXB6 (66% AA Identity, Homo sapiens)
MiscHocoMocoInferred - HOXB7 (66% AA Identity, Homo sapiens)
MiscHocoMocoInferred - HOXC6 (66% AA Identity, Homo sapiens)
MisciDMMPMMInferred - Ubx (66% AA Identity, Drosophila melanogaster)

Structure

Structure PDB Not_Covered

Experimental History

Method Constructs
Tried in PBM?
(Whether the protein was tried in PBM or not)
Tried in HT-SELEX
(Whether the protein was tried in HT-SELEX or not, and if so, then what kind of clones were tested)
Other Information?
(Tried with another method and failed?)

External Contribution