TF Info Page for TPRX1 (Homeodomain)
Conclusion
| Assessment | Binding Mode | Motif Status | Notes | Comments |
|---|---|---|---|---|
| Likely to be sequence specific TF | 1 Monomer or homomultimer | No motif | Expressed in early embryo as transcripts that contain a full homeodomain (PMID: 27412763). |
Description
| Description: | tetra-peptide repeat homeobox 1 [Source:HGNC Symbol;Acc:HGNC:32174] | |
| Entrez Summary | TBA | |
| Ensembl ID: | ENSG00000178928 | |
| External Link: | ||
| Interpro | IPR001356; IPR009057; IPR017970; ; | |
| Protein Domain: | ||
| Protein: ENSP00000323455 | DBD: Homeodomain | Other: |
| Protein: ENSP00000438832 | DBD: Homeodomain | Other: |
| Protein: ENSP00000438712 | DBD: Homeodomain | Other: |
Previous Annotations
| Source | Annotation |
| TF-CAT classification |
No PMIDS: |
| Vaquerizas 2009 TF classification "a" Has direct evidence of TF function; "b" Has evidence for an orthologous TF; "c" contains likely DBDs, but has no functional evidence; "x" is an unlikely TF such as predicted gene, genes with likely non-specific DBDs or that have function outside transcription; "other" category contains proteins without clear DBDs they curated from external sources. |
b |
| CisBP considers it as a TF? | Yes |
| TFclass considers it as a TF? | Yes |
| Has GO:0003700 "transcription factor activity, sequence-specific DNA binding" | No |
| GO-Info | |
|
Initial Assessment
1a1 Protein has a high confidence PWM (HT-SELEX, PBM or B1H model) or there is a crystal structure that supports sequence specific DNA binding; 1a2 There is high confidence data for a close ortholog (as defined in CisBP); 2a1 There is lower confidence direct evidence, such as a Jaspar, Hocomoco or Transfac model; 2a2 There is lower confidence evidence for an close ortholog; 3a There is decent circumstantial evidence for its role as a TF or not; 4a Two or more datasets predict it as a TF; 5a One of the source datasets predicts is as a TF |
3a, decent circumstantial evidence for its role as |
| TF has conditional DNA-binding requirements |