TF Info Page for ZHX3 (Homeodomain)

Conclusion

Assessment Binding Mode Motif Status Notes Comments
Likely to be sequence specific TF 1 Monomer or homomultimer No motif

Description

Description: zinc fingers and homeoboxes 3 [Source:HGNC Symbol;Acc:HGNC:15935]
Entrez Summary This gene encodes a member of the zinc fingers and homeoboxes (ZHX) gene family. The encoded protein contains two C2H2-type zinc fingers and five homeodomains and forms a dimer with itself or with zinc fingers and homeoboxes family member 1. In the nucleus, the dimerized protein interacts with the A subunit of the ubiquitous transcription factor nuclear factor-Y and may function as a transcriptional repressor. [provided by RefSeq, Jul 2008]
Ensembl ID: ENSG00000174306
External Link: CisBP
Interpro IPR001356; IPR009057; IPR015880; IPR024578;
Protein Domain: ENSP00000405421
Protein Domain: ENSP00000443783
Protein Domain: ENSP00000452965
Protein Domain: ENSP00000454006
Protein Domain: ENSP00000362358
Protein Domain: ENSP00000415498
Protein Domain: ENSP00000401852
Protein Domain: ENSP00000399433
Protein Domain: ENSP00000453310
Protein Domain: ENSP00000403048
Domain:
Protein: ENSP00000405421DBD: HomeodomainOther:
Protein: ENSP00000443783DBD: HomeodomainOther: Homez
Protein: ENSP00000452965DBD: HomeodomainOther:
Protein: ENSP00000454006DBD: HomeodomainOther:
Protein: ENSP00000362358DBD: HomeodomainOther:
Protein: ENSP00000415498DBD: HomeodomainOther:
Protein: ENSP00000401852DBD: HomeodomainOther:
Protein: ENSP00000399433DBD: HomeodomainOther: zf-Di19
Protein: ENSP00000453310DBD: HomeodomainOther: Homez
Protein: ENSP00000403048DBD: HomeodomainOther:

Previous Annotations

Source Annotation
TF-CAT classification No
PMIDS:
Vaquerizas 2009 TF classification
"a" Has direct evidence of TF function;
"b" Has evidence for an orthologous TF;
"c" contains likely DBDs, but has no functional evidence;
"x" is an unlikely TF such as predicted gene, genes with likely non-specific DBDs or that have function outside transcription;
"other" category contains proteins without clear DBDs they curated from external sources.
a
CisBP considers it as a TF? Yes
TFclass considers it as a TF? Yes
Has GO:0003700 "transcription factor activity, sequence-specific DNA binding" Yes
GO-Info GO:0003700
sequence-specific DNA binding transcription factor activity
IDA - PMID:12659632
Initial Assessment
1a1 Protein has a high confidence PWM (HT-SELEX, PBM or B1H model) or there is a crystal structure that supports sequence specific DNA binding;
1a2 There is high confidence data for a close ortholog (as defined in CisBP);
2a1 There is lower confidence direct evidence, such as a Jaspar, Hocomoco or Transfac model;
2a2 There is lower confidence evidence for an close ortholog;
3a There is decent circumstantial evidence for its role as a TF or not;
4a Two or more datasets predict it as a TF;
5a One of the source datasets predicts is as a TF
4a, two or more datasets predict it as a TF
TF has conditional DNA-binding requirements

DNA-Binding

Published Motif Data

Source Annotation Motif Evidence

Structure

Structure PDB Not_Covered

Experimental History

Method Constructs
Tried in PBM?
(Whether the protein was tried in PBM or not)
Tried in HT-SELEX
(Whether the protein was tried in HT-SELEX or not, and if so, then what kind of clones were tested)
Other Information?
(Tried with another method and failed?)

External Contribution