The Human Transcription Factors

Conclusion

Assessment	Binding Mode	Motif Status	Notes	Comments
Inferred motif	1 Monomer or homomultimer	In vivo/Misc source

Description

Description:

zinc finger E-box binding homeobox 2 [Source:HGNC Symbol;Acc:HGNC:14881]

Entrez Summary

The protein encoded by this gene is a member of the Zfh1 family of 2-handed zinc finger/homeodomain proteins. It is located in the nucleus and functions as a DNA-binding transcriptional repressor that interacts with activated SMADs. Mutations in this gene are associated with Hirschsprung disease/Mowat-Wilson syndrome. Alternatively spliced transcript variants have been found for this gene.[provided by RefSeq, Jan 2010]

Ensembl ID:

ENSG00000169554

External Link:

CisBP

Interpro

IPR001356; IPR007087; IPR008598; IPR009057; IPR015880; ;

Protein Domain:

ENSP00000302501

Protein Domain:

ENSP00000376601

Protein Domain:

ENSP00000395496

Protein Domain:

ENSP00000475329

Protein Domain:

ENSP00000454157

Protein Domain:

ENSP00000487174

Protein Domain:

ENSP00000394777

Protein Domain:

ENSP00000475502

Protein Domain:

ENSP00000443792

Protein Domain:

ENSP00000486240

Protein Domain:

ENSP00000490776

Protein Domain:

ENSP00000490508

Protein Domain:

ENSP00000490317

Protein Domain:

ENSP00000490141

Protein Domain:

ENSP00000490293

Protein Domain:

ENSP00000490872

Protein Domain:

ENSP00000489701

Protein Domain:

ENSP00000490723

Protein Domain:

ENSP00000490673

Protein Domain:

ENSP00000490934

Domain:

Protein: ENSP00000302501	DBD: C2H2 ZF Containing Proteins	Other: zf-C2H2_4, zf-H2C2_2
Protein: ENSP00000376601	DBD: C2H2 ZF Containing Proteins	Other:
Protein: ENSP00000395496	DBD: C2H2 ZF Containing Proteins	Other: zf-C2H2_4, zf-H2C2_2
Protein: ENSP00000475329	DBD: C2H2 ZF Containing Proteins	Other:
Protein: ENSP00000454157	DBD: C2H2 ZF Containing Proteins	Other: zf-C2H2_4, zf-H2C2_2
Protein: ENSP00000487174	DBD: C2H2 ZF Containing Proteins	Other: zf-C2H2_4, zf-H2C2_2
Protein: ENSP00000394777	DBD: C2H2 ZF Containing Proteins	Other:
Protein: ENSP00000475502	DBD: C2H2 ZF Containing Proteins	Other:
Protein: ENSP00000443792	DBD: C2H2 ZF Containing Proteins	Other: zf-C2H2_4, zf-H2C2_2
Protein: ENSP00000486240	DBD: C2H2 ZF Containing Proteins	Other:
Protein: ENSP00000490776	DBD: C2H2 ZF Containing Proteins	Other: zf-C2H2_4, zf-H2C2_2
Protein: ENSP00000490508	DBD: C2H2 ZF Containing Proteins	Other: zf-C2H2_4, zf-H2C2_2
Protein: ENSP00000490317	DBD: C2H2 ZF Containing Proteins	Other: zf-C2H2_4
Protein: ENSP00000490141	DBD: C2H2 ZF Containing Proteins	Other: zf-C2H2_4, zf-H2C2_2
Protein: ENSP00000490293	DBD: C2H2 ZF Containing Proteins	Other: zf-C2H2_4, zf-H2C2_2
Protein: ENSP00000490872	DBD: C2H2 ZF Containing Proteins	Other: zf-C2H2_4, zf-H2C2_2
Protein: ENSP00000489701	DBD: C2H2 ZF Containing Proteins	Other:
Protein: ENSP00000490723	DBD: C2H2 ZF Containing Proteins	Other: zf-C2H2_4, zf-H2C2_2
Protein: ENSP00000490673	DBD: C2H2 ZF Containing Proteins	Other: zf-C2H2_4, zf-H2C2_2
Protein: ENSP00000490934	DBD: C2H2 ZF Containing Proteins	Other:

Previous Annotations

Source	Annotation
TF-CAT classification	TF Gene_DNA-Binding sequence-specific_DNA Binding Transactivation_ PMIDS:11430829 12714599
Vaquerizas 2009 TF classification "a" Has direct evidence of TF function; "b" Has evidence for an orthologous TF; "c" contains likely DBDs, but has no functional evidence; "x" is an unlikely TF such as predicted gene, genes with likely non-specific DBDs or that have function outside transcription; "other" category contains proteins without clear DBDs they curated from external sources.	a
CisBP considers it as a TF?	Yes
TFclass considers it as a TF?	Yes
Has GO:0003700 "transcription factor activity, sequence-specific DNA binding"	Yes
GO-Info	GO:0001227 RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor IDA - PMID:20516212
Initial Assessment 1a1 Protein has a high confidence PWM (HT-SELEX, PBM or B1H model) or there is a crystal structure that supports sequence specific DNA binding; 1a2 There is high confidence data for a close ortholog (as defined in CisBP); 2a1 There is lower confidence direct evidence, such as a Jaspar, Hocomoco or Transfac model; 2a2 There is lower confidence evidence for an close ortholog; 3a There is decent circumstantial evidence for its role as a TF or not; 4a Two or more datasets predict it as a TF; 5a One of the source datasets predicts is as a TF	2a2, orthologous lower confidence evidence
TF has conditional DNA-binding requirements

DNA-Binding

Published Motif Data

Source	Annotation	Motif	Evidence
SMiLE-seq	Isakova2017		Inferred - ZEB1 (82% AA Identity, Mus musculus)
ChIP-seq	ENCODE		Inferred - ZEB1 (82% AA Identity, Homo sapiens)
ChIP-seq	JASPAR		Inferred - ZEB1 (82% AA Identity, Homo sapiens)
ChIP-seq	modENCODE		Inferred - ZEB1 (82% AA Identity, Homo sapiens)
Transfac	Transfac	License required	Inferred - ZEB1 (82% AA Identity, Homo sapiens)
Transfac	Transfac	License required	Inferred - ZEB1 (82% AA Identity, Homo sapiens)
Transfac	Transfac	License required	Inferred - ZEB1 (82% AA Identity, Homo sapiens)
Transfac	Transfac	License required	Inferred - ZEB1 (82% AA Identity, Homo sapiens)
Transfac	Transfac	License required	Inferred - ZEB1 (82% AA Identity, Homo sapiens)
Transfac	Transfac	License required	Inferred - ZEB1 (82% AA Identity, Homo sapiens)
Transfac	Transfac	License required	Inferred - ZEB1 (82% AA Identity, Homo sapiens)
Misc	HocoMoco		Inferred - ZEB1 (82% AA Identity, Homo sapiens)

Structure

Structure	PDB	Not_Covered

Experimental History

Method	Constructs
Tried in PBM? (Whether the protein was tried in PBM or not)
Tried in HT-SELEX (Whether the protein was tried in HT-SELEX or not, and if so, then what kind of clones were tested)
Other Information? (Tried with another method and failed?)

External Contribution

Name
Email
Comment
Reference

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The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 240, "scoreName": "E-value", "accession": "PF00096.24", "start": 240, "score": 6.600000000000001e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 262}}, {"startStyle": "curved", "end": 303, "endStyle": "curved", "aliStart": 281, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 303, "start": 281, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 303, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 281, "scoreName": "E-value", "accession": "PF00096.24", "start": 281, "score": 6.600000000000001e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 303}}, {"startStyle": "curved", "end": 330, "endStyle": "curved", "aliStart": 309, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 329, "start": 309, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 330, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 309, "scoreName": "E-value", "accession": "PF00096.24", "start": 309, "score": 6.600000000000001e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 329}}, {"startStyle": "curved", "end": 1020, "endStyle": "curved", "aliStart": 998, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 1020, "start": 998, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 1020, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. 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The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 1026, "scoreName": "E-value", "accession": "PF00096.24", "start": 1026, "score": 6.600000000000001e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 1048}}, {"startStyle": "curved", "end": 1075, "endStyle": "curved", "aliStart": 1054, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 1074, "start": 1054, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 1075, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. 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Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies [PUBMED:12445403]. The domain binds DNA through a helix-turn-helix (HTH) structure. ", "database": "PfamA", "aliStart": 651, "scoreName": "E-value", "accession": "PF00046.27", "start": 648, "score": 4.7e-05, "identifier": "Homeobox domain", "type": "DBD", "aliEnd": 695}}, {"startStyle": "jagged", "end": 589, "endStyle": "straight", "aliStart": 573, "text": "zf-H2C2_2", "colour": "#9999ff", "aliEnd": 589, "start": 570, "href": "http://pfam.xfam.org/family/PF13465.4", "type": "pfama", "display": "true", "metadata": {"end": 589, "description": NaN, "database": "PfamA", "aliStart": 573, "scoreName": "E-value", "accession": "PF13465.4", "start": 570, "score": 9.699999999999999e-32, "identifier": "Zinc-finger double domain", "type": "DBD", "aliEnd": 589}}, {"startStyle": "straight", "end": 601, "endStyle": "straight", "aliStart": 580, "text": "zf-C2H2_4", "colour": "#9999ff", "aliEnd": 600, "start": 580, "href": "http://pfam.xfam.org/family/PF13894.4", "type": "pfama", "display": "true", "metadata": {"end": 601, "description": "This family contains a number of divergent C2H2 type zinc fingers.", "database": "PfamA", "aliStart": 580, "scoreName": "E-value", "accession": "PF13894.4", "start": 580, "score": 4.6e-16, "identifier": "C2H2-type zinc finger", "type": "DBD", "aliEnd": 600}}], "length": 1214}

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The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. 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The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. 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The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 338, "scoreName": "E-value", "accession": "PF00096.24", "start": 338, "score": 1.5e-18, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 358}}], "length": 467}

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The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 241, "scoreName": "E-value", "accession": "PF00096.24", "start": 240, "score": 3.7e-18, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 263}}, {"startStyle": "curved", "end": 292, "endStyle": "curved", "aliStart": 270, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 292, "start": 270, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 292, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 270, "scoreName": "E-value", "accession": "PF00096.24", "start": 270, "score": 3.7e-18, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 292}}, {"startStyle": "curved", "end": 333, "endStyle": "curved", "aliStart": 311, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 333, "start": 311, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 333, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 311, "scoreName": "E-value", "accession": "PF00096.24", "start": 311, "score": 3.7e-18, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 333}}, {"startStyle": "curved", "end": 360, "endStyle": "curved", "aliStart": 339, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 359, "start": 339, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 360, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 339, "scoreName": "E-value", "accession": "PF00096.24", "start": 339, "score": 3.7e-18, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 359}}, {"startStyle": "jagged", "end": 728, "endStyle": "curved", "aliStart": 681, "text": "HD", "colour": "#228B22", "aliEnd": 725, "start": 678, "href": "http://pfam.xfam.org/family/PF00046.27", "type": "pfama", "display": "true", "metadata": {"end": 728, "description": "The homeobox domain or homeodomain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [PUBMED:2568852, PUBMED:1357790]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies [PUBMED:12445403]. The domain binds DNA through a helix-turn-helix (HTH) structure. ", "database": "PfamA", "aliStart": 681, "scoreName": "E-value", "accession": "PF00046.27", "start": 678, "score": 4.7e-05, "identifier": "Homeobox domain", "type": "DBD", "aliEnd": 725}}, {"startStyle": "jagged", "end": 619, "endStyle": "straight", "aliStart": 603, "text": "zf-H2C2_2", "colour": "#9999ff", "aliEnd": 619, "start": 600, "href": "http://pfam.xfam.org/family/PF13465.4", "type": "pfama", "display": "true", "metadata": {"end": 619, "description": NaN, "database": "PfamA", "aliStart": 603, "scoreName": "E-value", "accession": "PF13465.4", "start": 600, "score": 4.2999999999999995e-18, "identifier": "Zinc-finger double domain", "type": "DBD", "aliEnd": 619}}, {"startStyle": "straight", "end": 631, "endStyle": "straight", "aliStart": 610, "text": "zf-C2H2_4", "colour": "#9999ff", "aliEnd": 630, "start": 610, "href": "http://pfam.xfam.org/family/PF13894.4", "type": "pfama", "display": "true", "metadata": {"end": 631, "description": "This family contains a number of divergent C2H2 type zinc fingers.", "database": "PfamA", "aliStart": 610, "scoreName": "E-value", "accession": "PF13894.4", "start": 610, "score": 3.7e-13, "identifier": "C2H2-type zinc finger", "type": "DBD", "aliEnd": 630}}], "length": 731}

{"regions": [{"startStyle": "curved", "end": 234, "endStyle": "curved", "aliStart": 212, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 234, "start": 211, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 234, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 212, "scoreName": "E-value", "accession": "PF00096.24", "start": 211, "score": 6.600000000000001e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 234}}, {"startStyle": "curved", "end": 263, "endStyle": "curved", "aliStart": 241, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 263, "start": 241, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 263, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 241, "scoreName": "E-value", "accession": "PF00096.24", "start": 241, "score": 6.600000000000001e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 263}}, {"startStyle": "curved", "end": 304, "endStyle": "curved", "aliStart": 282, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 304, "start": 282, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 304, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 282, "scoreName": "E-value", "accession": "PF00096.24", "start": 282, "score": 6.600000000000001e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 304}}, {"startStyle": "curved", "end": 331, "endStyle": "curved", "aliStart": 310, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 330, "start": 310, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 331, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 310, "scoreName": "E-value", "accession": "PF00096.24", "start": 310, "score": 6.600000000000001e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 330}}, {"startStyle": "curved", "end": 1021, "endStyle": "curved", "aliStart": 999, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 1021, "start": 999, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 1021, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 999, "scoreName": "E-value", "accession": "PF00096.24", "start": 999, "score": 6.600000000000001e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 1021}}, {"startStyle": "curved", "end": 1049, "endStyle": "curved", "aliStart": 1027, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 1049, "start": 1027, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 1049, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 1027, "scoreName": "E-value", "accession": "PF00096.24", "start": 1027, "score": 6.600000000000001e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 1049}}, {"startStyle": "curved", "end": 1076, "endStyle": "curved", "aliStart": 1055, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 1075, "start": 1055, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 1076, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 1055, "scoreName": "E-value", "accession": "PF00096.24", "start": 1055, "score": 6.600000000000001e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 1075}}, {"startStyle": "jagged", "end": 699, "endStyle": "curved", "aliStart": 652, "text": "HD", "colour": "#228B22", "aliEnd": 696, "start": 649, "href": "http://pfam.xfam.org/family/PF00046.27", "type": "pfama", "display": "true", "metadata": {"end": 699, "description": "The homeobox domain or homeodomain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [PUBMED:2568852, PUBMED:1357790]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies [PUBMED:12445403]. The domain binds DNA through a helix-turn-helix (HTH) structure. ", "database": "PfamA", "aliStart": 652, "scoreName": "E-value", "accession": "PF00046.27", "start": 649, "score": 4.7e-05, "identifier": "Homeobox domain", "type": "DBD", "aliEnd": 696}}, {"startStyle": "jagged", "end": 590, "endStyle": "straight", "aliStart": 574, "text": "zf-H2C2_2", "colour": "#9999ff", "aliEnd": 590, "start": 571, "href": "http://pfam.xfam.org/family/PF13465.4", "type": "pfama", "display": "true", "metadata": {"end": 590, "description": NaN, "database": "PfamA", "aliStart": 574, "scoreName": "E-value", "accession": "PF13465.4", "start": 571, "score": 9.699999999999999e-32, "identifier": "Zinc-finger double domain", "type": "DBD", "aliEnd": 590}}, {"startStyle": "straight", "end": 602, "endStyle": "straight", "aliStart": 581, "text": "zf-C2H2_4", "colour": "#9999ff", "aliEnd": 601, "start": 581, "href": "http://pfam.xfam.org/family/PF13894.4", "type": "pfama", "display": "true", "metadata": {"end": 602, "description": "This family contains a number of divergent C2H2 type zinc fingers.", "database": "PfamA", "aliStart": 581, "scoreName": "E-value", "accession": "PF13894.4", "start": 581, "score": 4.6e-16, "identifier": "C2H2-type zinc finger", "type": "DBD", "aliEnd": 601}}], "length": 1215}

{"regions": [{"startStyle": "curved", "end": 147, "endStyle": "curved", "aliStart": 125, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 147, "start": 124, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 147, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 125, "scoreName": "E-value", "accession": "PF00096.24", "start": 124, "score": 3.9e-16, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 147}}, {"startStyle": "curved", "end": 176, "endStyle": "curved", "aliStart": 154, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 176, "start": 154, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 176, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 154, "scoreName": "E-value", "accession": "PF00096.24", "start": 154, "score": 3.9e-16, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 176}}, {"startStyle": "curved", "end": 217, "endStyle": "curved", "aliStart": 195, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 217, "start": 195, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 217, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 195, "scoreName": "E-value", "accession": "PF00096.24", "start": 195, "score": 3.9e-16, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 217}}], "length": 221}

{"regions": [{"startStyle": "curved", "end": 210, "endStyle": "curved", "aliStart": 188, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 210, "start": 187, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 210, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 188, "scoreName": "E-value", "accession": "PF00096.24", "start": 187, "score": 5.5e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 210}}, {"startStyle": "curved", "end": 239, "endStyle": "curved", "aliStart": 217, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 239, "start": 217, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 239, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 217, "scoreName": "E-value", "accession": "PF00096.24", "start": 217, "score": 5.5e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 239}}, {"startStyle": "curved", "end": 280, "endStyle": "curved", "aliStart": 258, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 280, "start": 258, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 280, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 258, "scoreName": "E-value", "accession": "PF00096.24", "start": 258, "score": 5.5e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 280}}, {"startStyle": "curved", "end": 307, "endStyle": "curved", "aliStart": 286, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 306, "start": 286, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 307, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 286, "scoreName": "E-value", "accession": "PF00096.24", "start": 286, "score": 5.5e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 306}}, {"startStyle": "curved", "end": 997, "endStyle": "curved", "aliStart": 975, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 997, "start": 975, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 997, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 975, "scoreName": "E-value", "accession": "PF00096.24", "start": 975, "score": 5.5e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 997}}, {"startStyle": "curved", "end": 1025, "endStyle": "curved", "aliStart": 1003, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 1025, "start": 1003, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 1025, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 1003, "scoreName": "E-value", "accession": "PF00096.24", "start": 1003, "score": 5.5e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 1025}}, {"startStyle": "curved", "end": 1052, "endStyle": "curved", "aliStart": 1031, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 1051, "start": 1031, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 1052, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 1031, "scoreName": "E-value", "accession": "PF00096.24", "start": 1031, "score": 5.5e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 1051}}, {"startStyle": "jagged", "end": 675, "endStyle": "curved", "aliStart": 628, "text": "HD", "colour": "#228B22", "aliEnd": 672, "start": 625, "href": "http://pfam.xfam.org/family/PF00046.27", "type": "pfama", "display": "true", "metadata": {"end": 675, "description": "The homeobox domain or homeodomain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [PUBMED:2568852, PUBMED:1357790]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies [PUBMED:12445403]. The domain binds DNA through a helix-turn-helix (HTH) structure. ", "database": "PfamA", "aliStart": 628, "scoreName": "E-value", "accession": "PF00046.27", "start": 625, "score": 4.6e-05, "identifier": "Homeobox domain", "type": "DBD", "aliEnd": 672}}, {"startStyle": "jagged", "end": 566, "endStyle": "straight", "aliStart": 550, "text": "zf-H2C2_2", "colour": "#9999ff", "aliEnd": 566, "start": 547, "href": "http://pfam.xfam.org/family/PF13465.4", "type": "pfama", "display": "true", "metadata": {"end": 566, "description": NaN, "database": "PfamA", "aliStart": 550, "scoreName": "E-value", "accession": "PF13465.4", "start": 547, "score": 8.099999999999999e-32, "identifier": "Zinc-finger double domain", "type": "DBD", "aliEnd": 566}}, {"startStyle": "straight", "end": 578, "endStyle": "straight", "aliStart": 557, "text": "zf-C2H2_4", "colour": "#9999ff", "aliEnd": 577, "start": 557, "href": "http://pfam.xfam.org/family/PF13894.4", "type": "pfama", "display": "true", "metadata": {"end": 578, "description": "This family contains a number of divergent C2H2 type zinc fingers.", "database": "PfamA", "aliStart": 557, "scoreName": "E-value", "accession": "PF13894.4", "start": 557, "score": 3.7999999999999996e-16, "identifier": "C2H2-type zinc finger", "type": "DBD", "aliEnd": 577}}], "length": 1191}

{"regions": [{"startStyle": "curved", "end": 234, "endStyle": "curved", "aliStart": 212, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 234, "start": 211, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 234, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 212, "scoreName": "E-value", "accession": "PF00096.24", "start": 211, "score": 6e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 234}}, {"startStyle": "curved", "end": 263, "endStyle": "curved", "aliStart": 241, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 263, "start": 241, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 263, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 241, "scoreName": "E-value", "accession": "PF00096.24", "start": 241, "score": 6e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 263}}, {"startStyle": "curved", "end": 304, "endStyle": "curved", "aliStart": 282, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 304, "start": 282, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 304, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 282, "scoreName": "E-value", "accession": "PF00096.24", "start": 282, "score": 6e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 304}}, {"startStyle": "curved", "end": 331, "endStyle": "curved", "aliStart": 310, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 330, "start": 310, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 331, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 310, "scoreName": "E-value", "accession": "PF00096.24", "start": 310, "score": 6e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 330}}, {"startStyle": "curved", "end": 1021, "endStyle": "curved", "aliStart": 999, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 1021, "start": 999, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 1021, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 999, "scoreName": "E-value", "accession": "PF00096.24", "start": 999, "score": 6e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 1021}}, {"startStyle": "curved", "end": 1049, "endStyle": "curved", "aliStart": 1027, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 1049, "start": 1027, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 1049, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 1027, "scoreName": "E-value", "accession": "PF00096.24", "start": 1027, "score": 6e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 1049}}, {"startStyle": "curved", "end": 1076, "endStyle": "curved", "aliStart": 1055, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 1075, "start": 1055, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 1076, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 1055, "scoreName": "E-value", "accession": "PF00096.24", "start": 1055, "score": 6e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 1075}}, {"startStyle": "jagged", "end": 699, "endStyle": "curved", "aliStart": 652, "text": "HD", "colour": "#228B22", "aliEnd": 696, "start": 649, "href": "http://pfam.xfam.org/family/PF00046.27", "type": "pfama", "display": "true", "metadata": {"end": 699, "description": "The homeobox domain or homeodomain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [PUBMED:2568852, PUBMED:1357790]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies [PUBMED:12445403]. The domain binds DNA through a helix-turn-helix (HTH) structure. ", "database": "PfamA", "aliStart": 652, "scoreName": "E-value", "accession": "PF00046.27", "start": 649, "score": 4.2e-05, "identifier": "Homeobox domain", "type": "DBD", "aliEnd": 696}}, {"startStyle": "jagged", "end": 590, "endStyle": "straight", "aliStart": 574, "text": "zf-H2C2_2", "colour": "#9999ff", "aliEnd": 590, "start": 571, "href": "http://pfam.xfam.org/family/PF13465.4", "type": "pfama", "display": "true", "metadata": {"end": 590, "description": NaN, "database": "PfamA", "aliStart": 574, "scoreName": "E-value", "accession": "PF13465.4", "start": 571, "score": 9.1e-32, "identifier": "Zinc-finger double domain", "type": "DBD", "aliEnd": 590}}, {"startStyle": "straight", "end": 602, "endStyle": "straight", "aliStart": 581, "text": "zf-C2H2_4", "colour": "#9999ff", "aliEnd": 601, "start": 581, "href": "http://pfam.xfam.org/family/PF13894.4", "type": "pfama", "display": "true", "metadata": {"end": 602, "description": "This family contains a number of divergent C2H2 type zinc fingers.", "database": "PfamA", "aliStart": 581, "scoreName": "E-value", "accession": "PF13894.4", "start": 581, "score": 4.2e-16, "identifier": "C2H2-type zinc finger", "type": "DBD", "aliEnd": 601}}], "length": 1203}

{"regions": [{"startStyle": "curved", "end": 122, "endStyle": "curved", "aliStart": 100, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 122, "start": 99, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 122, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 100, "scoreName": "E-value", "accession": "PF00096.24", "start": 99, "score": 2.8000000000000003e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 122}}, {"startStyle": "curved", "end": 151, "endStyle": "curved", "aliStart": 129, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 151, "start": 129, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 151, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 129, "scoreName": "E-value", "accession": "PF00096.24", "start": 129, "score": 2.8000000000000003e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 151}}, {"startStyle": "curved", "end": 192, "endStyle": "curved", "aliStart": 170, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 192, "start": 170, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 192, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 170, "scoreName": "E-value", "accession": "PF00096.24", "start": 170, "score": 2.8000000000000003e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 192}}, {"startStyle": "curved", "end": 219, "endStyle": "curved", "aliStart": 198, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 218, "start": 198, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 219, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 198, "scoreName": "E-value", "accession": "PF00096.24", "start": 198, "score": 2.8000000000000003e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 218}}, {"startStyle": "curved", "end": 909, "endStyle": "curved", "aliStart": 887, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 909, "start": 887, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 909, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 887, "scoreName": "E-value", "accession": "PF00096.24", "start": 887, "score": 2.8000000000000003e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 909}}, {"startStyle": "curved", "end": 937, "endStyle": "curved", "aliStart": 915, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 937, "start": 915, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 937, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 915, "scoreName": "E-value", "accession": "PF00096.24", "start": 915, "score": 2.8000000000000003e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 937}}, {"startStyle": "curved", "end": 964, "endStyle": "curved", "aliStart": 943, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 963, "start": 943, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 964, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 943, "scoreName": "E-value", "accession": "PF00096.24", "start": 943, "score": 2.8000000000000003e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 963}}, {"startStyle": "jagged", "end": 587, "endStyle": "curved", "aliStart": 540, "text": "HD", "colour": "#228B22", "aliEnd": 584, "start": 537, "href": "http://pfam.xfam.org/family/PF00046.27", "type": "pfama", "display": "true", "metadata": {"end": 587, "description": "The homeobox domain or homeodomain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [PUBMED:2568852, PUBMED:1357790]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies [PUBMED:12445403]. The domain binds DNA through a helix-turn-helix (HTH) structure. ", "database": "PfamA", "aliStart": 540, "scoreName": "E-value", "accession": "PF00046.27", "start": 537, "score": 3.9e-05, "identifier": "Homeobox domain", "type": "DBD", "aliEnd": 584}}, {"startStyle": "jagged", "end": 478, "endStyle": "straight", "aliStart": 462, "text": "zf-H2C2_2", "colour": "#9999ff", "aliEnd": 478, "start": 459, "href": "http://pfam.xfam.org/family/PF13465.4", "type": "pfama", "display": "true", "metadata": {"end": 478, "description": NaN, "database": "PfamA", "aliStart": 462, "scoreName": "E-value", "accession": "PF13465.4", "start": 459, "score": 3.9999999999999997e-32, "identifier": "Zinc-finger double domain", "type": "DBD", "aliEnd": 478}}, {"startStyle": "straight", "end": 490, "endStyle": "straight", "aliStart": 469, "text": "zf-C2H2_4", "colour": "#9999ff", "aliEnd": 489, "start": 469, "href": "http://pfam.xfam.org/family/PF13894.4", "type": "pfama", "display": "true", "metadata": {"end": 490, "description": "This family contains a number of divergent C2H2 type zinc fingers.", "database": "PfamA", "aliStart": 469, "scoreName": "E-value", "accession": "PF13894.4", "start": 469, "score": 1.8999999999999998e-16, "identifier": "C2H2-type zinc finger", "type": "DBD", "aliEnd": 489}}], "length": 1103}

{"regions": [{"startStyle": "curved", "end": 234, "endStyle": "curved", "aliStart": 212, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 234, "start": 211, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 234, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 212, "scoreName": "E-value", "accession": "PF00096.24", "start": 211, "score": 8e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 234}}, {"startStyle": "curved", "end": 263, "endStyle": "curved", "aliStart": 241, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 263, "start": 241, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 263, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 241, "scoreName": "E-value", "accession": "PF00096.24", "start": 241, "score": 8e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 263}}, {"startStyle": "curved", "end": 304, "endStyle": "curved", "aliStart": 282, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 304, "start": 282, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 304, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 282, "scoreName": "E-value", "accession": "PF00096.24", "start": 282, "score": 8e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 304}}, {"startStyle": "curved", "end": 356, "endStyle": "curved", "aliStart": 335, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 355, "start": 335, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 356, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 335, "scoreName": "E-value", "accession": "PF00096.24", "start": 335, "score": 8e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 355}}, {"startStyle": "curved", "end": 1046, "endStyle": "curved", "aliStart": 1024, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 1046, "start": 1024, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 1046, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 1024, "scoreName": "E-value", "accession": "PF00096.24", "start": 1024, "score": 8e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 1046}}, {"startStyle": "curved", "end": 1074, "endStyle": "curved", "aliStart": 1052, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 1074, "start": 1052, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 1074, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 1052, "scoreName": "E-value", "accession": "PF00096.24", "start": 1052, "score": 8e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 1074}}, {"startStyle": "curved", "end": 1101, "endStyle": "curved", "aliStart": 1080, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 1100, "start": 1080, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 1101, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 1080, "scoreName": "E-value", "accession": "PF00096.24", "start": 1080, "score": 8e-25, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 1100}}, {"startStyle": "jagged", "end": 724, "endStyle": "curved", "aliStart": 678, "text": "HD", "colour": "#228B22", "aliEnd": 721, "start": 674, "href": "http://pfam.xfam.org/family/PF00046.27", "type": "pfama", "display": "true", "metadata": {"end": 724, "description": "The homeobox domain or homeodomain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [PUBMED:2568852, PUBMED:1357790]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies [PUBMED:12445403]. The domain binds DNA through a helix-turn-helix (HTH) structure. ", "database": "PfamA", "aliStart": 678, "scoreName": "E-value", "accession": "PF00046.27", "start": 674, "score": 4.9e-05, "identifier": "Homeobox domain", "type": "DBD", "aliEnd": 721}}, {"startStyle": "straight", "end": 627, "endStyle": "straight", "aliStart": 606, "text": "zf-C2H2_4", "colour": "#9999ff", "aliEnd": 626, "start": 606, "href": "http://pfam.xfam.org/family/PF13894.4", "type": "pfama", "display": "true", "metadata": {"end": 627, "description": "This family contains a number of divergent C2H2 type zinc fingers.", "database": "PfamA", "aliStart": 606, "scoreName": "E-value", "accession": "PF13894.4", "start": 606, "score": 5.599999999999999e-16, "identifier": "C2H2-type zinc finger", "type": "DBD", "aliEnd": 626}}], "length": 1240}

{"regions": [{"startStyle": "curved", "end": 45, "endStyle": "curved", "aliStart": 23, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 45, "start": 23, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 45, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 23, "scoreName": "E-value", "accession": "PF00096.24", "start": 23, "score": 4.1e-17, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 45}}, {"startStyle": "curved", "end": 72, "endStyle": "curved", "aliStart": 51, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 71, "start": 51, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 72, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 51, "scoreName": "E-value", "accession": "PF00096.24", "start": 51, "score": 4.1e-17, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 71}}, {"startStyle": "curved", "end": 343, "endStyle": "curved", "aliStart": 322, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 342, "start": 322, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 343, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 322, "scoreName": "E-value", "accession": "PF00096.24", "start": 322, "score": 4.1e-17, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 342}}, {"startStyle": "curved", "end": 762, "endStyle": "curved", "aliStart": 740, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 762, "start": 740, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 762, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 740, "scoreName": "E-value", "accession": "PF00096.24", "start": 740, "score": 4.1e-17, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 762}}, {"startStyle": "curved", "end": 790, "endStyle": "curved", "aliStart": 768, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 790, "start": 768, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 790, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 768, "scoreName": "E-value", "accession": "PF00096.24", "start": 768, "score": 4.1e-17, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 790}}, {"startStyle": "curved", "end": 817, "endStyle": "curved", "aliStart": 796, "text": "zfC2H2", "colour": "#228B22", "aliEnd": 816, "start": 796, "href": "http://pfam.xfam.org/family/PF00096.24", "type": "pfama", "display": "true", "metadata": {"end": 817, "description": "The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity  site for Sp1 binding to the wt1 promoter [2].", "database": "PfamA", "aliStart": 796, "scoreName": "E-value", "accession": "PF00096.24", "start": 796, "score": 4.1e-17, "identifier": "Zinc finger, C2H2 type", "type": "DBD", "aliEnd": 816}}, {"startStyle": "jagged", "end": 440, "endStyle": "curved", "aliStart": 393, "text": "HD", "colour": "#228B22", "aliEnd": 437, "start": 390, "href": "http://pfam.xfam.org/family/PF00046.27", "type": "pfama", "display": "true", "metadata": {"end": 440, "description": "The homeobox domain or homeodomain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [PUBMED:2568852, PUBMED:1357790]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies [PUBMED:12445403]. The domain binds DNA through a helix-turn-helix (HTH) structure. ", "database": "PfamA", "aliStart": 393, "scoreName": "E-value", "accession": "PF00046.27", "start": 390, "score": 3.2e-05, "identifier": "Homeobox domain", "type": "DBD", "aliEnd": 437}}], "length": 956}

TF Info Page for ZEB2 (C2H2 ZF; Homeodomain)

Conclusion

Description

Previous Annotations

DNA-Binding

Published Motif Data

Structure

Experimental History

External Contribution