TF Info Page for ELF3 (Ets; AT hook)

Conclusion

Assessment Binding Mode Motif Status Notes Comments
Known motif 1 Monomer or homomultimer High-throughput in vitro

Description

Description: E74 like ETS transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:3318]
Entrez Summary NA
Ensembl ID: ENSG00000163435
External Link: CisBP
Interpro IPR000418; IPR003118; IPR013761; ;
Protein Domain: ENSP00000352673
Protein Domain: ENSP00000356252
Protein Domain: ENSP00000356253
Protein Domain: ENSP00000405162
Domain:
Protein: ENSP00000352673DBD: ETSOther: SAM_PNT
Protein: ENSP00000356252DBD: ETSOther: SAM_PNT
Protein: ENSP00000356253DBD: ETSOther: SAM_PNT
Protein: ENSP00000405162DBD: ETSOther: SAM_PNT

Previous Annotations

Source Annotation
TF-CAT classification TF Gene_DNA-Binding
sequence-specific_DNA Binding
Transactivation_
PMIDS:11893733
Vaquerizas 2009 TF classification
"a" Has direct evidence of TF function;
"b" Has evidence for an orthologous TF;
"c" contains likely DBDs, but has no functional evidence;
"x" is an unlikely TF such as predicted gene, genes with likely non-specific DBDs or that have function outside transcription;
"other" category contains proteins without clear DBDs they curated from external sources.
a
CisBP considers it as a TF? Yes
TFclass considers it as a TF? Yes
Has GO:0003700 "transcription factor activity, sequence-specific DNA binding" Yes
GO-Info GO:0000981
sequence-specific DNA binding RNA polymerase II transcription factor activity
IBA - GO_REF:0000033
GO:0001077
RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor a
IEA - GO_REF:0000019
GO:0003700
sequence-specific DNA binding transcription factor activity
NAS - PMID:9234700
Initial Assessment
1a1 Protein has a high confidence PWM (HT-SELEX, PBM or B1H model) or there is a crystal structure that supports sequence specific DNA binding;
1a2 There is high confidence data for a close ortholog (as defined in CisBP);
2a1 There is lower confidence direct evidence, such as a Jaspar, Hocomoco or Transfac model;
2a2 There is lower confidence evidence for an close ortholog;
3a There is decent circumstantial evidence for its role as a TF or not;
4a Two or more datasets predict it as a TF;
5a One of the source datasets predicts is as a TF
1a1, Direct HQ evidence
TF has conditional DNA-binding requirements

DNA-Binding

Published Motif Data

Source Annotation Motif Evidence
HT-SELEXJolma2013Direct
HT-SELEXJolma2013Direct
HT-SELEXYin2017Direct
HT-SELEXYin2017Direct
HT-SELEXYin2017Direct
HT-SELEXYin2017Direct
HT-SELEXYin2017Direct
HT-SELEXYin2017Direct
Methyl-HT-SELEXYin2017Direct
Methyl-HT-SELEXYin2017Direct
TransfacTransfacLicense requiredDirect
TransfacTransfacLicense requiredDirect
MiscHocoMocoDirect
PBMBadis09Inferred - Elf3 (100% AA Identity, Mus musculus)
PBMWei10Inferred - Elf3 (100% AA Identity, Mus musculus)
HT-SELEXJolma2010Inferred - EHF (84% AA Identity, Homo sapiens)
SELEXJASPARInferred - EHF (84% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - EHF (84% AA Identity, Homo sapiens)
MiscHocoMocoInferred - EHF (84% AA Identity, Homo sapiens)
MiscHOMERInferred - EHF (84% AA Identity, Homo sapiens)
PBMBadis09Inferred - Ehf (82% AA Identity, Mus musculus)
PBMWei10Inferred - Ehf (82% AA Identity, Mus musculus)
HT-SELEXYin2017Inferred - ELF5 (65% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - ELF5 (65% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - ELF5 (65% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - ELF5 (65% AA Identity, Homo sapiens)
PBMWei10Inferred - Elf5 (65% AA Identity, Mus musculus)
TransfacTransfacLicense requiredInferred - ELF5 (65% AA Identity, Homo sapiens)
MiscHocoMocoInferred - ELF5 (65% AA Identity, Homo sapiens)
MiscHOMERInferred - ELF5 (65% AA Identity, Homo sapiens)

Structure

Structure PDB 3JTG

Experimental History

Method Constructs
Tried in PBM?
(Whether the protein was tried in PBM or not)
Tried in HT-SELEX
(Whether the protein was tried in HT-SELEX or not, and if so, then what kind of clones were tested)
Other Information?
(Tried with another method and failed?)

External Contribution