TF Info Page for UBP1 (Grainyhead)


Assessment Binding Mode Motif Status Notes Comments
Known motif 1 Monomer or homomultimer High-throughput in vitro


Description: upstream binding protein 1 (LBP-1a) [Source:HGNC Symbol;Acc:HGNC:12507]
Entrez Summary NA
Ensembl ID: ENSG00000153560
External Link: CisBP
Interpro IPR007604; IPR013761;
Protein Domain: ENSP00000283629
Protein Domain: ENSP00000283628
Protein Domain: ENSP00000395558
Protein Domain: ENSP00000401614
Protein: ENSP00000283629DBD: CP2Other:
Protein: ENSP00000283628DBD: CP2Other:
Protein: ENSP00000395558DBD: CP2Other:
Protein: ENSP00000401614DBD: CP2Other:

Previous Annotations

Source Annotation
TF-CAT classification TF Gene_Transcription Factor Binding
tf co-factor binding_Co-activation_
Vaquerizas 2009 TF classification
"a" Has direct evidence of TF function;
"b" Has evidence for an orthologous TF;
"c" contains likely DBDs, but has no functional evidence;
"x" is an unlikely TF such as predicted gene, genes with likely non-specific DBDs or that have function outside transcription;
"other" category contains proteins without clear DBDs they curated from external sources.
CisBP considers it as a TF? Yes
TFclass considers it as a TF? Yes
Has GO:0003700 "transcription factor activity, sequence-specific DNA binding" Yes
GO-Info GO:0003700
sequence-specific DNA binding transcription factor activity
TAS - PMID:8114710
Initial Assessment
1a1 Protein has a high confidence PWM (HT-SELEX, PBM or B1H model) or there is a crystal structure that supports sequence specific DNA binding;
1a2 There is high confidence data for a close ortholog (as defined in CisBP);
2a1 There is lower confidence direct evidence, such as a Jaspar, Hocomoco or Transfac model;
2a2 There is lower confidence evidence for an close ortholog;
3a There is decent circumstantial evidence for its role as a TF or not;
4a Two or more datasets predict it as a TF;
5a One of the source datasets predicts is as a TF
1a1, Direct HQ evidence
TF has conditional DNA-binding requirements


Published Motif Data

Source Annotation Motif Evidence
TransfacTransfacLicense requiredDirect
TransfacTransfacLicense requiredDirect
PBMZoo_01Inferred - TFCP2 (85% AA Identity, Gallus gallus)
HT-SELEXYin2017Inferred - TFCP2L1 (81% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - TFCP2L1 (81% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - TFCP2L1 (81% AA Identity, Homo sapiens)
ChIP-seqhmCHIPInferred - Tcfcp2l1 (78% AA Identity, Mus musculus)
ChIP-seqhmCHIPInferred - Tcfcp2l1 (78% AA Identity, Mus musculus)


Structure PDB Not_Covered

Experimental History

Method Constructs
Tried in PBM?
(Whether the protein was tried in PBM or not)
Tried in HT-SELEX
(Whether the protein was tried in HT-SELEX or not, and if so, then what kind of clones were tested)
Other Information?
(Tried with another method and failed?)

External Contribution