TF Info Page for ZIC5 (C2H2 ZF)

Conclusion

Assessment Binding Mode Motif Status Notes Comments
Known motif 1 Monomer or homomultimer High-throughput in vitro

Description

Description: Zic family member 5 [Source:HGNC Symbol;Acc:HGNC:20322]
Entrez Summary This gene encodes a member of the ZIC family of C2H2-type zinc finger proteins. The encoded protein may act as a transcriptional repressor. Studies in mouse and Xenopus support a role for this gene in neural crest development. Elevated expression of this gene has been observed in various human cancers and may contribute to cancer progression. This gene is closely linked to a related family member on chromosome 13. [provided by RefSeq, Mar 2017]
Ensembl ID: ENSG00000139800
External Link: CisBP
Interpro IPR007087; IPR015880;
Protein Domain: ENSP00000267294
Domain:
Protein: ENSP00000267294DBD: C2H2 ZF Containing ProteinsOther:

Previous Annotations

Source Annotation
TF-CAT classification TF Gene Candidate_DNA-Binding
sequence-specific_DNA Binding_
PMIDS:15465018 15136147 15465018
Vaquerizas 2009 TF classification
"a" Has direct evidence of TF function;
"b" Has evidence for an orthologous TF;
"c" contains likely DBDs, but has no functional evidence;
"x" is an unlikely TF such as predicted gene, genes with likely non-specific DBDs or that have function outside transcription;
"other" category contains proteins without clear DBDs they curated from external sources.
b
CisBP considers it as a TF? Yes
TFclass considers it as a TF? Yes
Has GO:0003700 "transcription factor activity, sequence-specific DNA binding" No
GO-Info
Initial Assessment
1a1 Protein has a high confidence PWM (HT-SELEX, PBM or B1H model) or there is a crystal structure that supports sequence specific DNA binding;
1a2 There is high confidence data for a close ortholog (as defined in CisBP);
2a1 There is lower confidence direct evidence, such as a Jaspar, Hocomoco or Transfac model;
2a2 There is lower confidence evidence for an close ortholog;
3a There is decent circumstantial evidence for its role as a TF or not;
4a Two or more datasets predict it as a TF;
5a One of the source datasets predicts is as a TF
1a1, Direct HQ evidence
TF has conditional DNA-binding requirements

DNA-Binding

Published Motif Data

Source Annotation Motif Evidence
HT-SELEXYin2017Direct
Methyl-HT-SELEXYin2017Direct
PBMDREAM_contestInferred - Zic5 (99% AA Identity, Mus musculus)
HT-SELEXYin2017Inferred - ZIC1 (87% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - ZIC1 (87% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - ZIC1 (87% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - ZIC1 (87% AA Identity, Homo sapiens)
PBMBadis09Inferred - Zic1 (87% AA Identity, Mus musculus)
TransfacTransfacLicense requiredInferred - ZIC1 (87% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - ZIC1 (87% AA Identity, Homo sapiens)
MiscHocoMocoInferred - ZIC1 (87% AA Identity, Homo sapiens)
PBMBadis09Inferred - Zic2 (86% AA Identity, Mus musculus)
HT-SELEXYin2017Inferred - ZIC4 (86% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - ZIC4 (86% AA Identity, Homo sapiens)
ChIP-seqNajafabadi2015Inferred - ZIC2 (86% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - ZIC2 (86% AA Identity, Homo sapiens)
MiscHocoMocoInferred - ZIC2 (86% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - ZIC3 (83% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - ZIC3 (83% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - ZIC3 (83% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - ZIC3 (83% AA Identity, Homo sapiens)
PBMBadis09Inferred - Zic3 (83% AA Identity, Mus musculus)
TransfacTransfacLicense requiredInferred - ZIC3 (83% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - ZIC3 (83% AA Identity, Homo sapiens)
MiscHocoMocoInferred - ZIC3 (83% AA Identity, Homo sapiens)
SELEXJASPARInferred - Macho-1 (72% AA Identity, Halocynthia roretzi)

Structure

Structure PDB Not_Covered

Experimental History

Method Constructs
Tried in PBM?
(Whether the protein was tried in PBM or not)
Tried in HT-SELEX
(Whether the protein was tried in HT-SELEX or not, and if so, then what kind of clones were tested)
Other Information?
(Tried with another method and failed?)

External Contribution