TF Info Page for HMGA1 (AT hook)
Conclusion
| Assessment | Binding Mode | Motif Status | Notes | Comments |
|---|---|---|---|---|
| Known motif | 1 Monomer or homomultimer | In vivo/Misc source | Only known motifs are from Transfac or HocoMoco - origin is uncertain |
Description
| Description: | high mobility group AT-hook 1 [Source:HGNC Symbol;Acc:HGNC:5010] | |
| Entrez Summary | TBA | |
| Ensembl ID: | ENSG00000137309 | |
| External Link: | ||
| Interpro | IPR000116; IPR000637; IPR017956; IPR020478; | |
| Protein Domain: | ||
| Protein: ENSP00000308227 | DBD: AT hook | Other: |
| Protein: ENSP00000288245 | DBD: AT hook | Other: |
| Protein: ENSP00000363230 | DBD: AT hook | Other: |
| Protein: ENSP00000385693 | DBD: AT hook | Other: |
| Protein: ENSP00000399888 | DBD: AT hook | Other: |
Previous Annotations
| Source | Annotation |
| TF-CAT classification |
TF Gene_DNA-Binding non-sequence-specific Transcription Factor Binding tf co-factor binding_DNA Binding_ PMIDS:9199299 12907668 |
| Vaquerizas 2009 TF classification "a" Has direct evidence of TF function; "b" Has evidence for an orthologous TF; "c" contains likely DBDs, but has no functional evidence; "x" is an unlikely TF such as predicted gene, genes with likely non-specific DBDs or that have function outside transcription; "other" category contains proteins without clear DBDs they curated from external sources. |
c |
| CisBP considers it as a TF? | Yes |
| TFclass considers it as a TF? | Yes |
| Has GO:0003700 "transcription factor activity, sequence-specific DNA binding" | Yes |
| GO-Info |
GO:0001205 RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involv ISS - GO_REF:0000024 GO:0003700 sequence-specific DNA binding transcription factor activity IBA - GO_REF:0000033 |
|
Initial Assessment
1a1 Protein has a high confidence PWM (HT-SELEX, PBM or B1H model) or there is a crystal structure that supports sequence specific DNA binding; 1a2 There is high confidence data for a close ortholog (as defined in CisBP); 2a1 There is lower confidence direct evidence, such as a Jaspar, Hocomoco or Transfac model; 2a2 There is lower confidence evidence for an close ortholog; 3a There is decent circumstantial evidence for its role as a TF or not; 4a Two or more datasets predict it as a TF; 5a One of the source datasets predicts is as a TF |
3a, decent circumstantial evidence for its role as |
| TF has conditional DNA-binding requirements |