The Human Transcription Factors

Conclusion

Assessment	Binding Mode	Motif Status	Notes	Comments
Known motif	1 Monomer or homomultimer	High-throughput in vitro

Description

Description:	aryl hydrocarbon receptor nuclear translocator like [Source:HGNC Symbol;Acc:HGNC:701]
Entrez Summary	TBA
Ensembl ID:	ENSG00000133794
External Link:	T014205_1.02
Interpro	IPR000014; IPR001067; IPR001610; IPR011598; IPR013767; ;
Protein Domain:
Protein: ENSP00000374357	DBD: bHLH	Other: PAS, PAS_11, PAS_3, PAS_4, PAS_9
Protein: ENSP00000385915	DBD: bHLH	Other: PAS, PAS_11, PAS_3, PAS_4, PAS_9
Protein: ENSP00000384517	DBD: bHLH	Other: PAS, PAS_11, PAS_3, PAS_4, PAS_9
Protein: ENSP00000385897	DBD: bHLH	Other: PAS, PAS_11, PAS_3, PAS_4, PAS_9
Protein: ENSP00000385581	DBD: bHLH	Other: PAS, PAS_11, PAS_3, PAS_4, PAS_9
Protein: ENSP00000436721	DBD: bHLH	Other:

Previous Annotations

Source	Annotation
TF-CAT classification	TF Gene_DNA-Binding sequence-specific_DNA Binding TF PPI_ PMIDS:9576906 9616112
Vaquerizas 2009 TF classification "a" Has direct evidence of TF function; "b" Has evidence for an orthologous TF; "c" contains likely DBDs, but has no functional evidence; "x" is an unlikely TF such as predicted gene, genes with likely non-specific DBDs or that have function outside transcription; "other" category contains proteins without clear DBDs they curated from external sources.	a
CisBP considers it as a TF?	Yes
TFclass considers it as a TF?	Yes
Has GO:0003700 "transcription factor activity, sequence-specific DNA binding"	Yes
GO-Info	GO:0000982 RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor a ISS - GO_REF:0000024
Initial Assessment 1a1 Protein has a high confidence PWM (HT-SELEX, PBM or B1H model) or there is a crystal structure that supports sequence specific DNA binding; 1a2 There is high confidence data for a close ortholog (as defined in CisBP); 2a1 There is lower confidence direct evidence, such as a Jaspar, Hocomoco or Transfac model; 2a2 There is lower confidence evidence for an close ortholog; 3a There is decent circumstantial evidence for its role as a TF or not; 4a Two or more datasets predict it as a TF; 5a One of the source datasets predicts is as a TF	1a1, Direct HQ evidence
TF has conditional DNA-binding requirements

DNA-Binding

Published Motif Data

Source	Annotation	Motif	Evidence
HT-SELEX	Jolma2013		Direct
HT-SELEX	Yin2017		Direct
Methyl-HT-SELEX	Yin2017		Direct
Transfac	Transfac	License required	Direct
Misc	HocoMoco		Direct
PBM	Zoo_01		Inferred - Arntl (100% AA Identity, Mus musculus)
Transfac	Transfac	License required	Inferred - Arntl (100% AA Identity, Rattus norvegicus)
Misc	HOMER		Inferred - Arntl (100% AA Identity, Mus musculus)
HT-SELEX	Nitta2015		Inferred - cyc (66% AA Identity, Drosophila melanogaster)
PBM	Zoo_01		Inferred - Arnt (65% AA Identity, Mus musculus)
Transfac	Transfac	License required	Inferred - ARNT (65% AA Identity, Homo sapiens)
Transfac	Transfac	License required	Inferred - ARNT (65% AA Identity, Homo sapiens)
Transfac	Transfac	License required	Inferred - ARNT (65% AA Identity, Homo sapiens)
Misc	HocoMoco		Inferred - ARNT (65% AA Identity, Homo sapiens)
Misc	HOMER		Inferred - ARNT (65% AA Identity, Homo sapiens)
HT-SELEX	Yin2017		Inferred - ARNT2 (61% AA Identity, Homo sapiens)
PBM	Zoo_01		Inferred - Arnt2 (61% AA Identity, Mus musculus)
Transfac	Transfac	License required	Inferred - Arnt2 (61% AA Identity, Rattus norvegicus)
Misc	HocoMoco		Inferred - ARNT2 (61% AA Identity, Homo sapiens)
SELEX	JASPAR		Inferred - Arnt (51% AA Identity, Mus musculus)

Structure

Structure	PDB	4H10

Experimental History

Method	Constructs
Tried in PBM? (Whether the protein was tried in PBM or not)
Tried in HT-SELEX (Whether the protein was tried in HT-SELEX or not, and if so, then what kind of clones were tested)
Other Information? (Tried with another method and failed?)

External Contribution

Name
Email
Comment
Reference

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TF Info Page for ARNTL (bHLH)