get eID ENSG00000130675 else done selects

TF Info Page for MNX1 (Homeodomain)

Conclusion

Assessment Binding Mode Motif Status Notes Comments
Known motif 1 Monomer or homomultimer High-throughput in vitro

Description

Description: motor neuron and pancreas homeobox 1 [Source:HGNC Symbol;Acc:HGNC:4979]
Entrez Summary TBA
Ensembl ID: ENSG00000130675
External Link: T093301_1.02
Interpro IPR001356; IPR009057; IPR017970; IPR020479;
Protein Domain:
Protein: ENSP00000252971DBD: HomeodomainOther:
Protein: ENSP00000416458DBD: HomeodomainOther:
Protein: ENSP00000401158DBD: HomeodomainOther:
Protein: ENSP00000475129DBD: HomeodomainOther:
Protein: ENSP00000474286DBD: HomeodomainOther:
Protein: ENSP00000438552DBD: HomeodomainOther:

Previous Annotations

Source Annotation
TF-CAT classification No
PMIDS:
Vaquerizas 2009 TF classification
"a" Has direct evidence of TF function;
"b" Has evidence for an orthologous TF;
"c" contains likely DBDs, but has no functional evidence;
"x" is an unlikely TF such as predicted gene, genes with likely non-specific DBDs or that have function outside transcription;
"other" category contains proteins without clear DBDs they curated from external sources. 		b
CisBP considers it as a TF? Yes
TFclass considers it as a TF? Yes
Has GO:0003700 "transcription factor activity, sequence-specific DNA binding" Yes
GO-Info GO:0003700
sequence-specific DNA binding transcription factor activity
TAS - PMID:9843207
Initial Assessment
1a1 Protein has a high confidence PWM (HT-SELEX, PBM or B1H model) or there is a crystal structure that supports sequence specific DNA binding;
1a2 There is high confidence data for a close ortholog (as defined in CisBP);
2a1 There is lower confidence direct evidence, such as a Jaspar, Hocomoco or Transfac model;
2a2 There is lower confidence evidence for an close ortholog;
3a There is decent circumstantial evidence for its role as a TF or not;
4a Two or more datasets predict it as a TF;
5a One of the source datasets predicts is as a TF 		1a1, Direct HQ evidence
TF has conditional DNA-binding requirements

DNA-Binding

Published Motif Data

Source Annotation Motif Evidence
HT-SELEXJolma2013Direct
HT-SELEXYin2017Direct
Methyl-HT-SELEXYin2017Direct
Methyl-HT-SELEXYin2017Direct
PBMBerger08Inferred - Mnx1 (100% AA Identity, Mus musculus)
B1HJASPARInferred - exex (91% AA Identity, Drosophila melanogaster)
HT-SELEXNitta2015Inferred - exex (91% AA Identity, Drosophila melanogaster)
B1HJASPARInferred - unpg (70% AA Identity, Drosophila melanogaster)
HT-SELEXNitta2015Inferred - unpg (70% AA Identity, Drosophila melanogaster)
PBMBerger08Inferred - Gbx1 (66% AA Identity, Mus musculus)
HT-SELEXYin2017Inferred - GBX2 (66% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - GBX2 (66% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - GBX2 (66% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - GBX2 (66% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - GBX2 (66% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - GBX2 (66% AA Identity, Homo sapiens)
PBMBerger08Inferred - Gbx2 (66% AA Identity, Mus musculus)

Structure

Structure PDB Not_Covered

Experimental History

Method Constructs
Tried in PBM?
(Whether the protein was tried in PBM or not)
Tried in HT-SELEX
(Whether the protein was tried in HT-SELEX or not, and if so, then what kind of clones were tested)
Other Information?
(Tried with another method and failed?)

External Contribution