TF Info Page for MYF5 (bHLH)

Conclusion

Assessment Binding Mode Motif Status Notes Comments
Known motif 1 Monomer or homomultimer In vivo/Misc source Only known motifs are from Transfac or HocoMoco - origin is uncertain

Description

Description: myogenic factor 5 [Source:HGNC Symbol;Acc:HGNC:7565]
Entrez Summary NA
Ensembl ID: ENSG00000111049
External Link: CisBP
Interpro IPR002546; IPR011598; IPR022032; ;
Protein Domain: ENSP00000228644
Domain:
Protein: ENSP00000228644DBD: bHLHOther: Basic, Myf5

Previous Annotations

Source Annotation
TF-CAT classification TF Gene Candidate_DNA-Binding
sequence-specific_DNA Binding
Transactivation_
PMIDS:2385294 15497153
Vaquerizas 2009 TF classification
"a" Has direct evidence of TF function;
"b" Has evidence for an orthologous TF;
"c" contains likely DBDs, but has no functional evidence;
"x" is an unlikely TF such as predicted gene, genes with likely non-specific DBDs or that have function outside transcription;
"other" category contains proteins without clear DBDs they curated from external sources.
a
CisBP considers it as a TF? Yes
TFclass considers it as a TF? Yes
Has GO:0003700 "transcription factor activity, sequence-specific DNA binding" Yes
GO-Info GO:0001228
RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor
IBA - GO_REF:0000033
GO:0003705
RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
TAS - PMID:2311584
Initial Assessment
1a1 Protein has a high confidence PWM (HT-SELEX, PBM or B1H model) or there is a crystal structure that supports sequence specific DNA binding;
1a2 There is high confidence data for a close ortholog (as defined in CisBP);
2a1 There is lower confidence direct evidence, such as a Jaspar, Hocomoco or Transfac model;
2a2 There is lower confidence evidence for an close ortholog;
3a There is decent circumstantial evidence for its role as a TF or not;
4a Two or more datasets predict it as a TF;
5a One of the source datasets predicts is as a TF
2a1, Lower confidence direct evidence
TF has conditional DNA-binding requirements Obligate_Multimer

DNA-Binding

Published Motif Data

Source Annotation Motif Evidence
TransfacTransfacLicense requiredDirect
MiscHOMERInferred - Myf5 (100% AA Identity, Mus musculus)
HT-SELEXYin2017Inferred - MYOD1 (90% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - MYOD1 (90% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - MYOD1 (90% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - MYOD1 (90% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - MYOD1 (90% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - MYOD1 (90% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - MYOD1 (90% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - MYOD1 (90% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - MYOD1 (90% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - MYOD1 (90% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - MYOD1 (90% AA Identity, Homo sapiens)
ChIP-seqJASPARInferred - Myod1 (90% AA Identity, Mus musculus)
MiscHocoMocoInferred - MYOD1 (90% AA Identity, Homo sapiens)
HT-SELEXNitta2015Inferred - nau (84% AA Identity, Drosophila melanogaster)
HT-SELEXNitta2015Inferred - nau (84% AA Identity, Drosophila melanogaster)
HT-SELEXNitta2015Inferred - nau (84% AA Identity, Drosophila melanogaster)
SMiLE-seqIsakova2017Inferred - MYF6 (80% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - MYF6 (80% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - MYF6 (80% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - MYF6 (80% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - MYF6 (80% AA Identity, Homo sapiens)
PBMBadis09Inferred - Myf6 (80% AA Identity, Mus musculus)
PBMZoo_01Inferred - Myf6 (80% AA Identity, Mus musculus)
TransfacTransfacLicense requiredInferred - MYF6 (80% AA Identity, Homo sapiens)
MiscHocoMocoInferred - MYF6 (80% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - MYOG (78% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - MYOG (78% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - MYOG (78% AA Identity, Homo sapiens)
HT-SELEXYin2017Inferred - MYOG (78% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - MYOG (78% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - MYOG (78% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - MYOG (78% AA Identity, Homo sapiens)
Methyl-HT-SELEXYin2017Inferred - MYOG (78% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - MYOG (78% AA Identity, Homo sapiens)
TransfacTransfacLicense requiredInferred - MYOG (78% AA Identity, Homo sapiens)
ChIP-seqJASPARInferred - Myog (78% AA Identity, Mus musculus)
MiscHocoMocoInferred - MYOG (78% AA Identity, Homo sapiens)
MiscHOMERInferred - Myog (78% AA Identity, Mus musculus)
PBMDeMasi2011Inferred - hlh-1 (75% AA Identity, Caenorhabditis elegans)
PBMGrove09Inferred - hlh-1 (75% AA Identity, Caenorhabditis elegans)
ChIP-seqJASPARInferred - hlh-1 (75% AA Identity, Caenorhabditis elegans)
MiscHOMERInferred - hlh-1 (75% AA Identity, Caenorhabditis elegans)
PBMDeMasi2011Inferred - hlh-1 (73% AA Identity, Caenorhabditis elegans)
PBMDeMasi2011Inferred - hlh-1 (73% AA Identity, Caenorhabditis elegans)
PBMDeMasi2011Inferred - hlh-1 (73% AA Identity, Caenorhabditis elegans)

Structure

Structure PDB Not_Covered

Experimental History

Method Constructs
Tried in PBM?
(Whether the protein was tried in PBM or not)
Tried in HT-SELEX
(Whether the protein was tried in HT-SELEX or not, and if so, then what kind of clones were tested)
Other Information?
(Tried with another method and failed?)

External Contribution