TF Info Page for LHX6 (Homeodomain)
Conclusion
| Assessment | Binding Mode | Motif Status | Notes | Comments |
|---|---|---|---|---|
| Known motif | 1 Monomer or homomultimer | High-throughput in vitro |
Description
| Description: | LIM homeobox 6 [Source:HGNC Symbol;Acc:HGNC:21735] | |
| Entrez Summary | TBA | |
| Ensembl ID: | ENSG00000106852 | |
| External Link: | T093257_1.02 | |
| Interpro | IPR001356; IPR001781; IPR009057; IPR017970; | |
| Protein Domain: | ||
| Protein: ENSP00000340137 | DBD: Homeodomain | Other: LIM |
| Protein: ENSP00000362859 | DBD: Homeodomain | Other: LIM |
| Protein: ENSP00000362860 | DBD: Homeodomain | Other: LIM |
| Protein: ENSP00000377854 | DBD: Homeodomain | Other: LIM |
| Protein: ENSP00000452811 | DBD: Homeodomain | Other: |
| Protein: ENSP00000453798 | DBD: Homeodomain | Other: |
| Protein: ENSP00000441464 | DBD: Homeodomain | Other: LIM |
| Protein: ENSP00000475927 | DBD: Homeodomain | Other: |
Previous Annotations
| Source | Annotation |
| TF-CAT classification |
Indeterminate - There is no evidence for or against this genes role as a TF___ PMIDS:0 |
| Vaquerizas 2009 TF classification "a" Has direct evidence of TF function; "b" Has evidence for an orthologous TF; "c" contains likely DBDs, but has no functional evidence; "x" is an unlikely TF such as predicted gene, genes with likely non-specific DBDs or that have function outside transcription; "other" category contains proteins without clear DBDs they curated from external sources. |
a |
| CisBP considers it as a TF? | Yes |
| TFclass considers it as a TF? | Yes |
| Has GO:0003700 "transcription factor activity, sequence-specific DNA binding" | Yes |
| GO-Info |
GO:0003700 sequence-specific DNA binding transcription factor activity NAS - PMID:10393337 |
|
Initial Assessment
1a1 Protein has a high confidence PWM (HT-SELEX, PBM or B1H model) or there is a crystal structure that supports sequence specific DNA binding; 1a2 There is high confidence data for a close ortholog (as defined in CisBP); 2a1 There is lower confidence direct evidence, such as a Jaspar, Hocomoco or Transfac model; 2a2 There is lower confidence evidence for an close ortholog; 3a There is decent circumstantial evidence for its role as a TF or not; 4a Two or more datasets predict it as a TF; 5a One of the source datasets predicts is as a TF |
1a1, Direct HQ evidence |
| TF has conditional DNA-binding requirements |