TF Info Page for TSC22D1 (Unknown)

Conclusion

Assessment Binding Mode Motif Status Notes Comments
Likely to be sequence specific TF 1 Monomer or homomultimer No motif TSC22D1 appears to homo- and heterodimerize with other TFs to affect transcription (PMID: 10488076). In vitro, it has been shown to bind GC-rich DNA sequences (PMID: 9022669)

Description

Description: TSC22 domain family member 1 [Source:HGNC Symbol;Acc:HGNC:16826]
Entrez Summary NA
Ensembl ID: ENSG00000102804
External Link: CisBP
Interpro IPR000580; ;
Protein Domain: ENSP00000261489
Protein Domain: ENSP00000397435
Protein Domain: ENSP00000437414
Protein Domain: ENSP00000481585
Protein Domain: ENSP00000483407
Domain:
Protein: ENSP00000261489DBD: OtherOther: DUF972, DivIC, SOGA, TSC22, ZapB
Protein: ENSP00000397435DBD: OtherOther: DUF972, K-box, TSC22
Protein: ENSP00000437414DBD: OtherOther: SUIM_assoc
Protein: ENSP00000481585DBD: OtherOther: DUF972, DivIC, SOGA, TSC22, ZapB
Protein: ENSP00000483407DBD: OtherOther: DUF972, DivIC, SOGA, TSC22, ZapB

Previous Annotations

Source Annotation
TF-CAT classification TF Gene Candidate_Transcription Factor Binding
tf co-factor binding_Transactivation_
PMIDS:10488076
Vaquerizas 2009 TF classification
"a" Has direct evidence of TF function;
"b" Has evidence for an orthologous TF;
"c" contains likely DBDs, but has no functional evidence;
"x" is an unlikely TF such as predicted gene, genes with likely non-specific DBDs or that have function outside transcription;
"other" category contains proteins without clear DBDs they curated from external sources.
a
CisBP considers it as a TF? No
TFclass considers it as a TF? Yes
Has GO:0003700 "transcription factor activity, sequence-specific DNA binding" Yes
GO-Info GO:0003700
sequence-specific DNA binding transcription factor activity
IBA - GO_REF:0000033
Initial Assessment
1a1 Protein has a high confidence PWM (HT-SELEX, PBM or B1H model) or there is a crystal structure that supports sequence specific DNA binding;
1a2 There is high confidence data for a close ortholog (as defined in CisBP);
2a1 There is lower confidence direct evidence, such as a Jaspar, Hocomoco or Transfac model;
2a2 There is lower confidence evidence for an close ortholog;
3a There is decent circumstantial evidence for its role as a TF or not;
4a Two or more datasets predict it as a TF;
5a One of the source datasets predicts is as a TF
4a, two or more datasets predict it as a TF
TF has conditional DNA-binding requirements

DNA-Binding

Published Motif Data

Source Annotation Motif Evidence

Structure

Structure PDB Not_Covered

Experimental History

Method Constructs
Tried in PBM?
(Whether the protein was tried in PBM or not)
Tried in HT-SELEX
(Whether the protein was tried in HT-SELEX or not, and if so, then what kind of clones were tested)
Other Information?
(Tried with another method and failed?)

External Contribution