TF Info Page for HNF4A (Nuclear receptor)
Conclusion
| Assessment | Binding Mode | Motif Status | Notes | Comments |
|---|---|---|---|---|
| Known motif | 1 Monomer or homomultimer | High-throughput in vitro |
Description
| Description: | hepatocyte nuclear factor 4 alpha [Source:HGNC Symbol;Acc:HGNC:5024] | |
| Entrez Summary | TBA | |
| Ensembl ID: | ENSG00000101076 | |
| External Link: | T132746_1.02 | |
| Interpro | IPR000003; IPR000536; IPR001628; IPR001723; IPR003068; IPR008946; | |
| Protein Domain: | ||
| Protein: ENSP00000312987 | DBD: Nuclear Hormone Receptor | Other: Hormone_recep |
| Protein: ENSP00000315180 | DBD: Nuclear Hormone Receptor | Other: Hormone_recep |
| Protein: ENSP00000412111 | DBD: Nuclear Hormone Receptor | Other: Hormone_recep |
| Protein: ENSP00000410911 | DBD: Nuclear Hormone Receptor | Other: Hormone_recep |
| Protein: ENSP00000396216 | DBD: Nuclear Hormone Receptor | Other: Hormone_recep |
| Protein: ENSP00000476310 | DBD: Nuclear Hormone Receptor | Other: |
| Protein: ENSP00000476609 | DBD: Nuclear Hormone Receptor | Other: Hormone_recep |
Previous Annotations
| Source | Annotation |
| TF-CAT classification |
TF Gene_DNA-Binding sequence-specific_DNA Binding_ PMIDS:15581617 |
| Vaquerizas 2009 TF classification "a" Has direct evidence of TF function; "b" Has evidence for an orthologous TF; "c" contains likely DBDs, but has no functional evidence; "x" is an unlikely TF such as predicted gene, genes with likely non-specific DBDs or that have function outside transcription; "other" category contains proteins without clear DBDs they curated from external sources. |
a |
| CisBP considers it as a TF? | Yes |
| TFclass considers it as a TF? | Yes |
| Has GO:0003700 "transcription factor activity, sequence-specific DNA binding" | Yes |
| GO-Info |
GO:0001077 RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor a ISS - GO_REF:0000024 GO:0003700 sequence-specific DNA binding transcription factor activity IDA - PMID:10330009, PMID:12911579, PMID:16488887, GO:0003705 RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity IEA - GO_REF:0000019 GO:0004879 ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity IEA - GO_REF:0000002 |
|
Initial Assessment
1a1 Protein has a high confidence PWM (HT-SELEX, PBM or B1H model) or there is a crystal structure that supports sequence specific DNA binding; 1a2 There is high confidence data for a close ortholog (as defined in CisBP); 2a1 There is lower confidence direct evidence, such as a Jaspar, Hocomoco or Transfac model; 2a2 There is lower confidence evidence for an close ortholog; 3a There is decent circumstantial evidence for its role as a TF or not; 4a Two or more datasets predict it as a TF; 5a One of the source datasets predicts is as a TF |
1a1, Direct HQ evidence |
| TF has conditional DNA-binding requirements |