TF Info Page for YBX3 (CSD)
Conclusion
| Assessment | Binding Mode | Motif Status | Notes | Comments |
|---|---|---|---|---|
| Known motif | 1 Monomer or homomultimer | 100 perc ID - in vitro | Identical DBD to YBX1. Might also bind RNA. |
Description
| Description: | Y-box binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2428] | |||||||||
| Entrez Summary | Enables RNA binding activity. Involved in cellular hyperosmotic response; cellular response to tumor necrosis factor; and negative regulation of programmed cell death. Located in cytosol. [provided by Alliance of Genome Resources, Apr 2022] | |||||||||
| Ensembl ID: | ENSG00000060138 | |||||||||
| External Link: | CisBP | |||||||||
| Interpro | IPR002059; IPR011129; IPR012340; IPR019844; | |||||||||
| Protein Domain: | ENSP00000228251 | |||||||||
| Protein Domain: | ENSP00000279550 | |||||||||
| Protein Domain: | ENSP00000485718 | |||||||||
| Domain: |
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Previous Annotations
| Source | Annotation |
| TF-CAT classification |
Not a TF - Evidence that it is not a TF___ PMIDS:0 |
| Vaquerizas 2009 TF classification "a" Has direct evidence of TF function; "b" Has evidence for an orthologous TF; "c" contains likely DBDs, but has no functional evidence; "x" is an unlikely TF such as predicted gene, genes with likely non-specific DBDs or that have function outside transcription; "other" category contains proteins without clear DBDs they curated from external sources. |
a |
| CisBP considers it as a TF? | Yes |
| TFclass considers it as a TF? | Yes |
| Has GO:0003700 "transcription factor activity, sequence-specific DNA binding" | Yes |
| GO-Info |
GO:0001227 RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor IEA - GO_REF:0000019 GO:0003700 sequence-specific DNA binding transcription factor activity NAS - PMID:8710501 |
|
Initial Assessment
1a1 Protein has a high confidence PWM (HT-SELEX, PBM or B1H model) or there is a crystal structure that supports sequence specific DNA binding; 1a2 There is high confidence data for a close ortholog (as defined in CisBP); 2a1 There is lower confidence direct evidence, such as a Jaspar, Hocomoco or Transfac model; 2a2 There is lower confidence evidence for an close ortholog; 3a There is decent circumstantial evidence for its role as a TF or not; 4a Two or more datasets predict it as a TF; 5a One of the source datasets predicts is as a TF |
1a2, Orthologous HQ evidence |
| TF has conditional DNA-binding requirements |